Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs10857676 chr10:134970598 G/C 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs10857677 chr10:134972679 A/C 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs10857679 chr10:134978825 A/G 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs10865535 chr2:3217794 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs10872312 chr6:127680571 T/C 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs10894767 chr11:133811531 G/A 2.03E-9 109 13.1 19.33 0.52 KM Plot
LAML rs10896814 chr11:58430699 T/C 2.58E-5 111 18.75 11.13 4.58 KM Plot
LAML rs10903358 chr10:1102386 G/A 2.12E-5 109 13.15 20.3 2.55 KM Plot
LAML rs10904571 chr10:850762 A/G 7.29E-6 109 16.3 16.2 6.12 KM Plot
LAML rs10904572 chr10:859854 G/C 2.2E-6 110 16.3 16.2 7.13 KM Plot
LAML rs10919047 chr1:169033499 C/A 2.55E-8 108 13.1 22.37 1 KM Plot
LAML rs10919049 chr1:169034974 A/G 2.55E-8 108 13.1 22.37 1 KM Plot
LAML rs11032589 chr11:34291492 T/C 0.000145 111 14.18 15.77 0 KM Plot
LAML rs11032599 chr11:34306802 G/T 0.000118 111 13.2 16.3 0 KM Plot
LAML rs11070375 chr15:42870587 A/G 2.69E-5 106 14.68 16.3 0 KM Plot